CelliVerse

Overview

celliverse provides an integrated framework for single-cell RNA-seq analysis with a focus on data-driven clustering, marker discovery, marker assessment and cell type annotation. Its methods use cell-intrinsic expression organisation to support robust characterisation of cellular populations while remaining practical within common single-cell workflows.

The package includes ClustoCell for unsupervised cell clustering and sub-clustering, tools for positive and negative marker discovery, marker purity assessment, dataset-level feature selection, label transfer and annotation workflows. It also provides CelliVerse MarkerDB, a curated marker resource containing positive and negative markers for human and mouse cell types.

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